Autoimmune diseases are a group of sinister diseases where the immune system attacks the body that it was designed to protect. One mechanism that explains auto-immune conditions is molecular biomimicry. When intruders invade our bodies, the immune system creates antibodies that mark these intruders (antigens) as a foreign foe. The immune system then able to destroy the intruders.
During digestion, proteins from animal-based foods are broken down into their component amino acids. Some proteins may be absorbed from the intestine without being fully broken down into their amino acid components. Small chains of amino acids are called peptides. These peptides may be treated as a foreign invader by our immune system.